doco changes.

[jalview.git] / help / helpTOC.xml

diff --git a/help/helpTOC.xml b/help/helpTOC.xml
index 1bbe5c0..cc3555e 100755 (executable)
--- a/help/helpTOC.xml
+++ b/help/helpTOC.xml
@@ -8,6 +8,7 @@
           target="editInSelArea"/>\r
           <tocitem text="User Defined Sequence Features" target="search"/>\r
           <tocitem text="Sequence Feature Groups" target="seqfeatures"/>\r
+          <tocitem text="Sequence Feature Settings" target="seqfeatures.settings"/>\r
           <tocitem text="Extended Sequence Feature Input File" target="features.fileformat"/>\r
           <tocitem text="Annotations File" target="annotations.fileformat"/>\r
         </tocitem>\r
@@ -15,12 +16,16 @@
        <tocitem text="Alignment Annotations" target ="alannotation" expand="false">\r
           <tocitem text="Conservation" target="calcs.alconserv"/>\r
           <tocitem text="Quality" target="calcs.alquality"/>\r
+          <tocitem text="Annotations File Format" target="annotations.fileformat"/>\r
         </tocitem>\r
        <tocitem text="Input / Output" target="io"/>\r
        <tocitem text="Key Strokes" target="keys"/>\r
        <tocitem text="Making figures" target="export"/>\r
        <tocitem text="Editing Alignments" target ="edit"/>\r
-       <tocitem text="Sequence Features" target="seqfeatures"/>\r
+       <tocitem text="Sequence Features" target="seqfeatures" expand="false">\r
+          <tocitem text="Sequence Feature Settings" target="seqfeatures.settings"/>\r
+          <tocitem text="Sequence Features File" target="features.fileformat"/>\r
+        </tocitem>\r
        <tocitem text="Web Services" target="webservice" expand="false">\r
                <tocitem text="Clustal Alignment" target="clustal"/>\r
                 <tocitem text="Muscle Alignment" target="muscle"/>\r