jalview 2.5 documentation (still)

[jalview.git] / help / helpTOC.xml

diff --git a/help/helpTOC.xml b/help/helpTOC.xml
index feafc0f..f0403e7 100755 (executable)
--- a/help/helpTOC.xml
+++ b/help/helpTOC.xml
@@ -20,9 +20,10 @@
 <toc version="1.0">
 <tocitem text="Jalview Documentation" target="home" expand="true" >
        <tocitem text="What's new" target="new" expand="true">
+      <tocitem text="Graduated Feature Colours" target="features.featureschemes"/>
+      <tocitem text="Sort by Features" target="seqfeatures.settings"/>
+      <tocitem text="Envision2 Service" target="webservice"/>
       <tocitem text="Release History" target="release"/>
-               <tocitem text="Sequence Retrieval" target="seqfetch"/>
-               <tocitem text="VAMSAS Interoperation" target="vamsas"/>
        </tocitem>
     <tocitem text="Editing Alignments" target ="edit"/>        
     <tocitem text="Cursor Mode" target="cursor"/>
@@ -51,6 +52,7 @@
             </tocitem>
           <tocitem text="Secondary Structure Prediction" target="jnet"/>
                <tocitem text="Sequence Retrieval" target="seqfetch"/>
+               <tocitem text="Database Reference Retrieval" target="dbreffetcher"/>
                <tocitem text="DAS Feature Retrieval" target="das.viewing"/>
        </tocitem>
        <tocitem text="Colour Schemes" target="colours" expand="false">