JAL-2163 set title for the alignframe from restored view state

[jalview.git] / help / helpTOC.xml

diff --git a/help/helpTOC.xml b/help/helpTOC.xml
index b956004..fe8e1a9 100755 (executable)
--- a/help/helpTOC.xml
+++ b/help/helpTOC.xml
@@ -27,7 +27,7 @@
                                <tocitem text="PDB Sequence Fetcher" target="pdbfetcher" />
                                <tocitem text="PDB Structure Chooser" target="pdbchooser" />
                                <tocitem text="Chimera Viewer" target="chimera" />
-                               <tocitem text="Select columns by annotation" target="selectcolbyannot" />
+                               <tocitem text="Select Columns by Annotation" target="selectcolbyannot" />
                                <tocitem text="Latest Release Notes" target="release"/>
                </tocitem>
                
@@ -49,7 +49,7 @@
                <tocitem text="Viewing Trees" target="treeviewer" expand="false" />
                <tocitem text="Fetching Sequences" target="seqfetch" />         
                
-               <tocitem text="Select columns by annotation" target="selectcolbyannot" />
+               <tocitem text="Select Columns by Annotation" target="selectcolbyannot" />
                
                <tocitem text="Nucleic Acid Support" target="nucleicAcids" expand="false">
                        <tocitem text="Viewing RNA structure" target="varna" />
@@ -114,6 +114,7 @@
                        <tocitem text="Tree/PCA Input Data" target="recoverInputdata" />
                        <tocitem text="Pairwise Alignments" target="pairwise" />
                        <tocitem text="Remove Redundancy" target="redundancy" />
+                       <tocitem text="Reference Sequences" target="referenceseq" />
                </tocitem>
                
                <tocitem text="Sequence Annotations" target="seqannots" expand="true">
@@ -126,7 +127,7 @@
                        <tocitem text="Consensus" target="calcs.consensus" />
                        <tocitem text="RNA Structure Consensus" target="calcs.alstrconsensus" />
                        <tocitem text="Annotations File Format" target="annotations.fileformat" />
-                       <tocitem text="Select Column by Annotation" target="calcs.annotation" />
+                       <tocitem text="Select Columns by Annotation" target="selectcolbyannot" />
                </tocitem>
                <tocitem text="3D Structure Data" target="viewingpdbs" expand="false">
                        <tocitem text="PDB Sequence Fetcher" target="pdbfetcher" />
@@ -150,7 +151,7 @@
                                <tocitem text="Annotations Menu" target="alwAnnotations" />
                                <tocitem text="Format Menu" target="alwFormat" />
                                <tocitem text="Colour Menu" target="alwColour" />
-                               <tocitem text="Calculation Menu" target="alwCalc" />
+                               <tocitem text="Calculate Menu" target="alwCalc" />
                                <tocitem text="Web Service Menu" target="wsMenu" />
                                <tocitem text="Annotation Panel Menu" target="annotPanelMenu" />
                                <tocitem text="Popup Menu" target="popMenu" />