+++ /dev/null
-<html>
-<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
- * Copyright (C) 2014 The Jalview Authors
- *
- * This file is part of Jalview.
- *
- * Jalview is free software: you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
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- * of the License, or (at your option) any later version.
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- -->
-<head><title>Alignment Consensus Annotation</title></head>
-<body>
-<p><strong>Alignment Consensus Annotation</strong></p>
-<p>The consensus displayed below the alignment is the percentage of the modal
- residue per column. By default this calculation includes gaps in columns.
- You can choose to ignore gaps in the calculation by right clicking on the label
- "Consensus" to the left of the consensus bar chart.
-<p>If the modal value is shared by more than 1 residue, a "+" symbol
- is used in the display for the simple reason that it is not possible to display
- multiple characters in a single character space.
-<p><strong>Copying the consensus sequence</strong></p>
-<p>Select the <strong>"Copy Consensus Sequence"</strong> entry from
-the consensus annotation label to copy the alignment's consensus sequence to the
-clipboard.
-
-<p><strong>Sequence logo</strong></p>
- By clicking on the label you can also activate the sequence logo. It
- indicates the relative amount of residues per column which can be
- estimated by its size in the logo. The tooltip of a column gives the
- exact numbers for all occurring residues.
- <br />If columns of the alignment are very diverse, then it can
- sometimes be difficult to see the sequence logo - in this case, right
- click on the annotation row label and select
- <strong>Normalise Consensus Logo</strong> to scale all columns of the
- logo to the same height.
- </p>
-</body>
-</html>