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JAL-2089 patch broken merge to master for Release 2.10.0b1
[jalview.git] / help / html / calculations / consensus.html
diff --git a/help/html/calculations/consensus.html b/help/html/calculations/consensus.html
index 0476f05..c1b276d 100644 (file)
--- a/help/html/calculations/consensus.html
+++ b/help/html/calculations/consensus.html
@@ -1,7 +1,7 @@
 <html>
 <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
- * Copyright (C) 2015 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -43,7 +43,7 @@
     entry from the consensus annotation label to copy the alignment's
     consensus sequence to the clipboard.
   <p>
-    <strong>Sequence logo</strong>
+    <a name="logo"><strong>Sequence logo</strong></a>
   </p>
   By clicking on the label you can also activate the sequence logo. It
   indicates the relative amount of residues per column which can be
@@ -56,6 +56,13 @@
   logo to the same height.
 
   <p>
+    <strong>Group Consensus</strong><br> If sequence groups have
+    been defined, then selecting option 'Group Consensus' in the <a
+      href="../menus/alwannotation.html">Annotations menu</a> will
+    result in Consensus being calculated for each group, as well as the
+    alignment as a whole.
+  </p>
+  <p>
     <strong>cDNA Consensus</strong>
   </p>
   A