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- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
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* This file is part of Jalview.
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* Jalview is free software: you can redistribute it and/or
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+ * of the License, or (at your option) any later version.
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+ * You should have received a copy of the GNU General Public License
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+<head>
+<title>Removing Redundancy</title>
+</head>
+<body>
+ <p>
+ <strong>Removing redundancy</strong>
+ </p>
+ <p>
+ Selecting the option in the Alignment window's <strong>Edit</strong>
+ menu or pressing <strong>'CONTROL+D'</strong> brings up a dialog box
+ asking you to select a threshold. If the percentage identity between
+ the aligned positions of any two sequences in the visible alignment
+ exceeds this value, the shorter sequence is discarded.<br> <em>Note:</em>
+ The redundancy calculation is done when the dialog box is opened.
+ For large numbers of sequences this can take a long time as all
+ pairs have to be compared.
+ </p>
+</body>
+</html>
git://source.jalview.org / jalview.git / blobdiff