correct menu entry names and typos

[jalview.git] / help / html / calculations / treeviewer.html

diff --git a/help/html/calculations/treeviewer.html b/help/html/calculations/treeviewer.html
index bc46771..f2c7d3d 100755 (executable)
--- a/help/html/calculations/treeviewer.html
+++ b/help/html/calculations/treeviewer.html
@@ -16,9 +16,15 @@
   are also reflected in any other analysis windows associated with the
   alignment, such as another tree viewer.</p>
 
-<p>
-  Clicking on an internal node of the tree will rearrange the tree
-  diagram, inverting the ordering of the branches at that node.
+<p>Moving the mouse over an internal node of the tree will highlight
+  it. You can then : <ul>
+  <li>Click the highlighted node to select all the sequences in that branch.
+  <li>Double-click the highlighted node to rearrange the tree
+  diagram by inverting the branch ordering at that
+  node.
+  <li>Right-click to open the 'Select Sub-Tree Colour' dialog box, to
+  pick a new colour for the sub-tree and associated sequences.
+  </ul>
 </p>
 <p>
   Clicking anywhere along the extent of the tree (but not on a leaf or
@@ -47,31 +53,37 @@ retrieved with the 'Input Data...' entry.
 associated with a tree. Trees calculated by Jalview have branch
 lengths, which correspond to the distance measure used to construct
 the tree. Tree imported from outside may also contain bootstrap information,
-or additional leaves from sequences not present in the associated
+and additional leaves from sequences not present in the associated
 alignment.
 </p>
 <p>The view menu contains options controlling the way a tree is
-rendered and labelled:</p>
-<p><ul>
+rendered and labelled:
+<ul>
 <li><strong>Fit to Window</strong><p>
 The tree layout will be scaled to fit in the  display
 window. You may need to reduce the font size to minimise the leaf
 label overlap when this option is selected.
 </p></li>
-<li><strong>Font Size -</strong><em>n</em><p>
+<li><strong>Font Size ...</strong><em>n</em><p>
 Brings up a dialog box to set the font size for the leaf
 names. <em>n</em> is the current font size.
 </p></li>
 <li><strong>Show Distances</strong><p>
-Labels each branch or leaf with its associated branch length.
-</p></li>
+Labels each branch or leaf with its associated branch
+length.</p></li>
 <li><strong>Show Bootstrap values</strong><p>
 Labels each branch or leaf with its associated bootstrap value.
 </p></li>
 <li><strong>Mark unlinked leaves</strong><p>
 Toggles the display of a '*' at the beginning of a leaf label to
-indicate that there is no sequence corresponding to that leaf in the associated alignment.
+indicate that there is no sequence corresponding to that leaf in the
+associated alignment.
 </p></li>
+<li><strong>Associate Leaves with ...</strong><p>
+Only visible when there are <a href="../features/multipleviews.html">multiple views</a> of the same
+alignment to show and edit which alignment views are associated with
+the leaves of the displayed tree.
+</p>
 </ul>
 </p>
 </body>