<html>\r
-<head>\r
+<head><title>Clustal Colour Scheme</title>\r
<style type="text/css">\r
<!--\r
td {\r
<body>\r
<p><em>Clustal X</em></p>\r
<div align="center">\r
- <table width="400" border="1">\r
- <tr>\r
- <td bgcolor="#ff0000">N</td>\r
- <td bgcolor="#ff0000">G</td>\r
- <td bgcolor="#f60909">P</td>\r
- <td bgcolor="#f30c0c">B</td>\r
- <td bgcolor="#e81717">D</td>\r
- </tr>\r
- <tr>\r
- <td bgcolor="#e11e1e">S</td>\r
- <td bgcolor="#a85757">C</td>\r
- <td bgcolor="#9d6262">Y</td>\r
- <td bgcolor="#7e8181">K</td>\r
- <td bgcolor="#7c8383">X</td>\r
- </tr>\r
- <tr>\r
- <td bgcolor="#778888">Q</td>\r
- <td bgcolor="#738c8c">W</td>\r
- <td bgcolor="#738c8c">T</td>\r
- <td bgcolor="#708f8f">R</td>\r
- <td bgcolor="#708f8f">H</td>\r
- </tr>\r
- <tr>\r
- <td bgcolor="#5ba4a4">Z</td>\r
- <td bgcolor="#3fc0c0">E</td>\r
- <td bgcolor="#2cd3d3">A</td>\r
- <td bgcolor="#1ee1e1">F</td>\r
- <td bgcolor="#1ee1e1">M</td>\r
- </tr>\r
- <tr> </td>\r
- <td bgcolor="#1ce3e3">L</td>\r
- <td bgcolor="#07f8f8">V</td>\r
- <td bgcolor="#00ffff">I</td>\r
- </tr>\r
- </table>\r
+ <p>Clustal X is a graphical interface for the ClustalW multiple sequence alignment\r
+ program. Sequences can be colored either by assigning a color to specific\r
+ residues, or on the basis of an alignment consensus. The residues in each\r
+ column are colored according to the consensus character assigned to that column.\r
+ In this way, you can choose to highlight, for example, conserved hydrophylic\r
+ or hydrophobic positions in the alignment. </p>\r
+ <p></p>\r
</div>\r
</body>\r
</html>\r
git://source.jalview.org / jalview.git / blobdiff