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<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
- * Copyright (C) 2015 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
*
* This file is part of Jalview.
*
alignment analysis (Livingstone C.D. and Barton G.J. (1993), Protein
Sequence Alignments: A Strategy for the Hierarchical Analysis of
Residue Conservation.CABIOS Vol. 9 No. 6 (745-756)). See the <a
- href="../calculations/conservation.html"
- >conservation calculation</a> help page for a more thorough
- explanation of the calculation.
+ href="../calculations/conservation.html">conservation
+ calculation</a> help page for a more thorough explanation of the
+ calculation.
</p>
<p>For an already coloured alignment, the conservation index at
each alignment position is used to modify the shading intensity of
<p>
Conservation can be calculated over all sequences in an alignment,
or just within specific groups (such as those defined by <a
- href="../calculations/tree.html"
- >phylogenetic tree partitioning</a>). The option 'apply to all groups'
- controls whether the contrast slider value will be applied to the
- indices for the currently selected group, or all groups defined over
- the alignment.
+ href="../calculations/tree.html">phylogenetic tree
+ partitioning</a>). The option 'apply to all groups' controls whether
+ the contrast slider value will be applied to the indices for the
+ currently selected group, or all groups defined over the alignment.
</p>
</body>
</html>