on its helices. The helices are determined from the secondary
structure line in the Stockholm file (#GC SS_cons) written in WUSS
notation that specifies base pairing. See <a
- href="http://en.wikipedia.org/wiki/Stockholm_format"
- > Wikipedia</a> or <a
- href="http://jalview-rnasupport.blogspot.com/2010/06/parsing-wuss-notation-of-rna-secondary.html"
- > Jalview RNA Support Blog</a> for more information about Stockholm
+ href="http://en.wikipedia.org/wiki/Stockholm_format">
+ Wikipedia</a> or <a
+ href="http://jalview-rnasupport.blogspot.com/2010/06/parsing-wuss-notation-of-rna-secondary.html">
+ Jalview RNA Support Blog</a> for more information about Stockholm
files and WUSS notation.
</p>
Select "Colour"