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<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
*
* This file is part of Jalview.
*
</td>
<td>Set the colourscheme for the alignment. This can be any of
the built-in colourschemes, a name of a predefined colourscheme
- (defined in the jalview properties file), or an 'inline' colourscheme
+ (defined in the Jalview properties file), or an 'inline' colourscheme
(see the applet's colour parameter for more information).</td>
</tr>
<tr>
arguments have been processed</div>
</td>
</tr>
+ <tr>
+ <td>
+ <div align="center">-jabaws URL</div>
+ <td>
+ <div align="left">Specify the URL of the preferred JABAWS server</div>
+ </td>
+ </tr>
<tr>
<td>
<div align="center">-vdoc VAMSAS DOCUMENT FILE/URL</div>
<td><div align="center">-blc FILE</div></td>
<td><div align="left">Create alignment file FILE in BLC format.</div></td>
</tr>
+ <tr>
+ <td><div align="center">-json FILE</div></td>
+ <td><div align="left">Create alignment file FILE in JSON format.</div></td>
+ </tr>
<tr>
<td><div align="center">-jalview FILE</div></td>