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- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
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* This file is part of Jalview.
* PURPOSE. See the GNU General Public License for more details.
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<title>Jalview Command Line Arguments
</title>
<body>
See <a href="featuresFormat.html" target="NEW">Features
File</a> (Known as Groups file prior to 2.08) description. </p>
- </div></td>
+ </div>
+ </td>
+ </tr>
+ <tr>
+ <td>
+ <div align="center">-colour COLOURSCHEME</div>
+ </td>
+ <td>Set the colourscheme for the alignment. This can be any of
+ the built-in colourschemes, a name of a predefined colourscheme
+ (defined in the jalview properties file), or an 'inline' colourscheme
+ (see the applet's colour parameter for more information).</td>
</tr>
<tr>
<td>