JAL-3224 JAL-3225 Some fixes in install4j template and build.gradle, and a correction...

[jalview.git] / help / html / features / clarguments.html

diff --git a/help/html/features/clarguments.html b/help/html/features/clarguments.html
index 4b4aab9..fa273a5 100644 (file)
--- a/help/html/features/clarguments.html
+++ b/help/html/features/clarguments.html
@@ -122,30 +122,6 @@
     </tr>
     <tr>
       <td>
-        <div align="center">-dasserver nickname=URL</div>
-      <td>
-        <div align="left">
-          Add and enable a <a href="dassettings.html">DAS server</a>
-          with given nickname (alphanumeric or underscores only) for
-          retrieval of features for all alignments<br> Sources that
-          also support the sequence command may be specified by
-          prepending the URL with 'sequence:'<br> <em>e.g.</em>
-          sequence:http://localdas.somewhere.org/das/source
-        </div>
-      </td>
-    </tr>
-    <tr>
-      <td>
-        <div align="center">-fetchfrom nickname</div>
-      <td>
-        <div align="left">
-          Query a <a href="dassettings.html">DAS source</a> called
-          nickname for features for the alignments and display them
-        </div>
-      </td>
-    </tr>
-    <tr>
-      <td>
         <div align="center">-groovy FILE/URL</div>
       <td>
         <div align="left">Execute groovy script in FILE (where
@@ -258,6 +234,14 @@
       <td><div align="left">Create Scalable Vector Graphics
           file FILE from alignment.</div></td>
     </tr>
+    <tr>
+      <td><div align="center">-biojsMSA FILE</div></td>
+      <td><div align="left">Write an HTML page to display
+          the alignment with the <a href="biojsmsa.html">
+          BioJS MSAviewer MSA</a>
+          </div>
+      </td>
+    </tr>
   </table>
 </body>
 </html>