+++ /dev/null
-<html>
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- * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
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-<head>
-<title>Select/Hide Columns by Annotation</title>
-</head>
-
-<body>
- <p>
- <strong>Select/Hide Columns by Annotation</strong>
- </p>
- <p>
- The 'Select/Hide by Annotation' window allows columns to be selected
- or hidden according to annotation rows on the alignment. The dialog
- box is opened <em>via</em> "<strong>Select→Select/Hide
- Columns by Annotation...</strong>", and different filters are then
- presented for filtering data according to the selected annotation
- row.
- </p>
- <table>
- <tr>
- <td><img src="AnnotationColumnSelectionWithSM.gif"></td>
- <td><img src="AnnotationColumnSelectionWithoutSM.gif"></td>
- </tr>
- </table>
- <p>The drop down menu lists the annotation available on the
- alignment. Sequence associated annotation rows will be shown with
- the sequence ID appended to the annotation label. It is only
- possible to select one row at a time.</p>
- <p>
- If an annotation with numeric values is selected, the threshold
- filter option is activated. For other types of annotation, use the
- text box and secondary structure check boxes (right). The radio
- buttons at the bottom of the dialog specify the action applied to
- columns matching the query.<br /> <em>Note: annotation
- containing only numeric labels (e.g. T-COFFEE column confidence
- scores) will not be treated as quantitative data. You will need to
- enter search expressions to select columns in this case.</em>
- </p>
- <ul>
- <li><strong>Search Filter</strong>
- <ul>
- <li>Enter text or regular expressions in the text box to
- activate the 'Display Label' and 'Description' options.</li>
- <li>Selecting the description or label options will
- activate the filter, and any matching columns will be
- highlighted or hidden.</li>
- </ul>
- <li><strong>Structure Filter</strong>
- <ul>
- <li>Select the checkboxes to filter by secondary structure
- type.</li>
- </ul>
- <li><strong>Threshold Filter</strong>
- <ul>
- <li>This filter is only activated for annotation which
- contain numeric values</li>
- <li>Select whether to filter the alignment above or below
- the threshold.</li>
- <li>Change the threshold value with the slider, or enter it
- in the text box.</li>
- </ul>
- <li><strong>Actions</strong>
- <ul>
- <li>'Select' (the default), selects columns matching the
- query settings.</li>
- <li>'Hide' causes matching columns to be hidden.</li>
- </ul></li>
- </ul>
- <p>Hit 'Cancel' to restore the alignment view to its previous
- state before any filtering was applied.</p>
-</body>
-</html>
git://source.jalview.org / jalview.git / blobdiff