The 'Select/Hide by Annotation' window allows columns to be selected
or hidden according to annotation rows on the alignment. The dialog
box is opened <em>via</em> "<strong>Select→Select/Hide
- Columns by Annotation...</strong>", and different filters are
- presented dependent upon the data shown in the selected annotation row.
+ Columns by Annotation...</strong>", and different filters are then
+ presented for filtering data according to the selected annotation
+ row.
</p>
<table>
<tr>
- <td><img src="annotationColumnSelectionWithSM.gif"></td>
- <td><img src="annotationColumnSelectionWithoutSM.gif"></td>
+ <td><img src="AnnotationColumnSelectionWithSM.gif"></td>
+ <td><img src="AnnotationColumnSelectionWithoutSM.gif"></td>
</tr>
</table>
-
- <p>If an annotation with numeric values is selected, the
- threshold filter option is activated. For other types of annotation,
- use the text box and secondary structure check boxes (right). The
- radio buttons at the bottom of the dialog specify the action applied
- to columns matching the query.</p>
+ <p>The drop down menu lists the annotation available on the
+ alignment. Sequence associated annotation rows will be shown with
+ the sequence ID appended to the annotation label. It is only
+ possible to select one row at a time.</p>
+ <p>
+ If an annotation with numeric values is selected, the threshold
+ filter option is activated. For other types of annotation, use the
+ text box and secondary structure check boxes (right). The radio
+ buttons at the bottom of the dialog specify the action applied to
+ columns matching the query.<br /> <em>Note: annotation
+ containing only numeric labels (e.g. T-COFFEE column confidence
+ scores) will not be treated as quantitative data. You will need to
+ enter search expressions to select columns in this case.</em>
+ </p>
<ul>
<li><strong>Search Filter</strong>
<ul>