</p>
<p>
<strong><em>Feature settings pop-up menu</em></strong><br> <strong>Right-click</strong>
- on a feature to open a pop-up menu that allows you to<ul><li>Hide, show and
- select columns containing that feature</li><li>Sort the alignment or
- current selection using that feature type (see below)</li><li>Toggle the
- type of colouring used for the feature</li></ul><p>Features may be highlighted
- with either a single colour or a <a href="featureschemes.html">feature
- colourscheme</a> based on either the scores associated with that
- feature or from the feature's description (e.g. to distinguish
- different names associated with a DOMAIN feature).
+ on a feature to open a pop-up menu that allows you to
+ <ul>
+ <li>Hide, show and select columns containing that feature</li>
+ <li>Sort the alignment or current selection using that feature
+ type (see below)</li>
+ <li>Toggle the type of colouring used for the feature</li>
+ </ul>
+ <p>
+ Features may be highlighted with either a single colour or a <a
+ href="featureschemes.html">feature colourscheme</a> based on
+ either the scores associated with that feature or from the feature's
+ description (e.g. to distinguish different names associated with a
+ DOMAIN feature).
</p>
<p>
- <strong><a name="sortbyfeature">Ordering alignment by features</a></strong><br> The 'Seq
- Sort by Score' and 'Seq Sort by Density' buttons will sort the
- alignment based on the average score or total number of currently
- active features and groups on each sequence. To order the alignment
- using a specific feature type, use the <em>sort by ..</em> entries
- in the pop-up menu for that type.<br> <em>Feature sorting
- and graduated feature colouring were introduced in Jalview 2.5</em>
+ <strong><a name="sortbyfeature">Ordering alignment by
+ features</a></strong><br> The 'Seq Sort by Score' and 'Seq Sort by
+ Density' buttons will sort the alignment based on the average score
+ or total number of currently active features and groups on each
+ sequence. To order the alignment using a specific feature type, use
+ the <em>sort by ..</em> entries in the pop-up menu for that type.<br>
+ <em>Feature sorting and graduated feature colouring were
+ introduced in Jalview 2.5</em>
</p>
<p>
ordering based on the average length of each feature type.
</p>
<p>
- The <strong><em>transparency slider setting</em></strong> controls the visibility
- of features rendered below other features. Reducing the transparency
- will mean that features at the top of the list can obscure features
- lower down, and increasing it allows the user to 'see through' the
- upper layers of a set of features.
+ The <strong><em>transparency slider setting</em></strong> controls
+ the visibility of features rendered below other features. Reducing
+ the transparency will mean that features at the top of the list can
+ obscure features lower down, and increasing it allows the user to
+ 'see through' the upper layers of a set of features.
</p>
<p>
<strong><em>You can save all features, with their