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-<title>Multiple Alignment Views</title>
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-<p><strong>Multiple Alignment Views<strong></p>
-<p>Multiple alignment views allows the same alignment to be viewed
-independently in many different ways simultaneously. Each view is an
-independent visualization of the same alignment, so each may have a
-different ordering, colouring, row and column hiding and seuqence
-feature and annotation display setting, but alignment, feature and
-annotation edits are common to all, since this affects the underlying
-data.</p>
-<p>Create a new view using the <strong>"View→New
-View"</strong> menu item, or by pressing <strong>Control+T</strong>. A newly
-created view will be identical to the view it was created from, but any
-changes to the way the alignment is coloured or displayed will only
-affect the new view.</p>
-<p>A particular view may focus on some specific aspect of an
-alignment - for example, hiding all but the region of an alignment
-containing a particular domain. <strong>Right-clicking</strong> a view's
-tab opens the View Name dialog box, allowing it to be renamed to
-something more meaningful.</p>
-<p><strong>Viewing Multiple Views Simultaneously</strong></p>
-<p>Multiple views of an alignment are, by default, gathered together
-as tabs within a single alignment window. They can be viewed
-simultanously by pressing <strong>X</strong> (or via <strong>"View→Expand"</strong>)
-to expand each view into its own linked alignment window. Expanded views
-are gathered back into into a single tabbed alignment window by pressing
-<strong>G</strong>, or by selecting <strong>"View→Gather"</strong>).
-</p>
-<p><strong>Structure and Analysis Viewers and Multiple
-Views</strong></p>
-<p>A tree calculated on a particular view, or loaded onto it, is by
-default associated with just that view. However, the <a
- href="../calculations/treeviewer.html">Tree Viewer's</a> <strong>"View→Associate
-leaves"</strong> submenu allows a tree's view association to be changed to
-to any or all other views.</p>
-<p>The results of a <a href="../calculations/pca.html">PCA
-calculation</a> on a particular view may also be associated with other
-views, using the PCA Viewer's <strong>"View→Associate
-Nodes"</strong> submenu.</p>
-<p>A <a href="pdbviewer.html">PDB Structure Viewer</a> opened on a
-structure associated with a sequence in a particular view will also, by
-default, only be associated with the sequence as it is displayed in that
-view. The "View→Associate View" submenu allows the
-association of alternative views.</p>
-<p><em>Multiple Views were introduced in Jalview 2.2</em></p>
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git://source.jalview.org / jalview.git / blobdiff