<title>Multiple Alignment Views</title>
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-<p><strong>Multiple Alignment Views<strong></p>
+<p><strong>Multiple Alignment Views</strong></p>
<p>Multiple alignment views allows the same alignment to be viewed
independently in many different ways simultaneously. Each view is an
independent visualization of the same alignment, so each may have a
are gathered back into into a single tabbed alignment window by pressing
<strong>G</strong>, or by selecting <strong>"View→Gather"</strong>).
</p>
+<p><strong>Hidden Sequence Representatives and Multiple
+Views</strong></p>
+<p>There are some unexpected interactions between hidden sequence
+representatives and their display in multiple views. See the
+corresponding entry in the <a href="hiddenRegions.html">documentation
+for hidden regions</a>.</p>
<p><strong>Structure and Analysis Viewers and Multiple
Views</strong></p>
<p>A tree calculated on a particular view, or loaded onto it, is by
calculation</a> on a particular view may also be associated with other
views, using the PCA Viewer's <strong>"View→Associate
Nodes"</strong> submenu.</p>
-<p>A <a href="pdbviewer.html">PDB Structure Viewer</a> opened on a
-structure associated with a sequence in a particular view will also, by
-default, only be associated with the sequence as it is displayed in that
-view. The "View→Associate View" submenu allows the
-association of alternative views.</p>
+<p><a href="jmol.html">PDB Structure Viewers</a>
+opened on a structure associated with a sequence in a particular view are now (as of Jalview 2.3) associated with the same sequence in all views. This means that when 'Colour by Sequence' is selected in the structure view, the colour will be updated to the colours given in the view with the current input focus.
+<!--
+ also, by default, only be associated
+with the sequence as it is displayed in that view. The
+"View→Associate View" submenu allows the association of
+alternative views.</p> -->
<p><em>Multiple Views were introduced in Jalview 2.2</em></p>
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