added command line help documentation and preferences help to

[jalview.git] / help / html / features / preferences.html

diff --git a/help/html/features/preferences.html b/help/html/features/preferences.html
index 55ccf51..0abce06 100755 (executable)
--- a/help/html/features/preferences.html
+++ b/help/html/features/preferences.html
@@ -26,6 +26,9 @@
 <p><strong><a name="visual">Visual</a> Preferences tab</strong></p>\r
 <p><em>Maximise Window</em> - If this is selected, a new alignment window will stretch \r
   to fit the available space.</p>\r
+<p><em>Show Overview Window</em> - When this is selected, the <a\r
+  href="overview.html">alignment overview</a> panel is opened by\r
+  default for a new alignment window.</p>\r
 <p><em>Show Annotations</em> - If this is selected the new window will display an annotation \r
   panel below the sequences. This annotation panel may have several rows describing \r
   the whole alignment. The 3 standard annotations <em>Conservation</em>, <em>Quality</em> and <em>Consensus</em> \r