remove system.out

[jalview.git] / help / html / features / preferences.html

diff --git a/help/html/features/preferences.html b/help/html/features/preferences.html
index e5c08ed..0abce06 100755 (executable)
--- a/help/html/features/preferences.html
+++ b/help/html/features/preferences.html
@@ -26,6 +26,9 @@
 <p><strong><a name="visual">Visual</a> Preferences tab</strong></p>\r
 <p><em>Maximise Window</em> - If this is selected, a new alignment window will stretch \r
   to fit the available space.</p>\r
+<p><em>Show Overview Window</em> - When this is selected, the <a\r
+  href="overview.html">alignment overview</a> panel is opened by\r
+  default for a new alignment window.</p>\r
 <p><em>Show Annotations</em> - If this is selected the new window will display an annotation \r
   panel below the sequences. This annotation panel may have several rows describing \r
   the whole alignment. The 3 standard annotations <em>Conservation</em>, <em>Quality</em> and <em>Consensus</em> \r
@@ -61,6 +64,9 @@
   <br>\r
   You must enter $SEQUENCE_ID$ within your URL. This will be replaced by the chosen \r
   sequence id when you click on it. </p>\r
+<p>eg.<br>\r
+  UniRef100 = http://www.ebi.uniprot.org/uniprot-srv/uniRefView.do?proteinAc=$SEQUENCE_ID$&amp;library=uniref100<br>\r
+  Swissprot = http://www.expasy.org/uniprot/$SEQUENCE_ID$</p>\r
 <p><em>Default Browser (Unix)</em><br>\r
   Its difficult in Java to detect the default web browser for Unix users. If Jalview \r
   can't find your default web browser, enter the name or full path to your web \r