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<!--\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)\r
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)\r
+ * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle\r
* \r
* This file is part of Jalview.\r
* \r
Structures associated with the alignment are marked by having "consensus" attached to their name. VARNA contains two different entries for consensus structures.\r
<ul>\r
<li>Consensus structure: the individual sequence folded into the consensus structure</li>\r
- <li>Trimed consensus structure: the individual sequence\r
+ <li>Trimmed consensus structure: the individual sequence\r
folded into the the gap-free consensus structure. That means all\r
columns that contained gaps in the individual sequence were\r
removed. If this breaks a base-pair the pairing is removed also.\r
<li>Highlighting bases - Move mouse over columns in the Jalview alignment panel</li>\r
</ul>\r
\r
-<p><strong>Functionality provided by Jmol</strong></p>\r
+<p><strong>Functionality provided by VARNA</strong></p>\r
<p>VARNA's own functions are accessed by right-clicking in the\r
structure display area. That will open the VARNA pop-up menu,\r
which provides access to a number of features like different draw algorithm, color highlighting or annotations. \r
</p>\r
<p><strong>More Information</strong></p>\r
-<p>VARNA is a very powerful RNA viewer on it's own. Only the\r
+<p>VARNA is a very powerful RNA viewer on its own. Only the\r
essentials have been described here - the interested reader is\r
referred to <a href="http://varna.lri.fr/usermanual.html">VARNA's own\r
comprehensive online documentation</a>.</p>\r