</ul>
</li>
<li><strong>Selecting Structures</strong><br />You can select
- the structures to you want to open and view by selecting them with
+ the structures that you want to open and view by selecting them with
the mouse and keyboard.<br />By default, if structures were
discovered, then some will already be selected according to the
criteria shown in the drop-down menu. The default criteria is
retrieved with this service are derived directly from the PDB 3D
structure data, which can be viewed in the same way above. Secondary
structure and temperature factor annotation can also be added. <br />
- </p>
- <p>
- <strong>Retrieving sequences from the PDB</strong><br>Jalview
+
+ <br>Jalview
will also read PDB files directly - either in PDB format, or <a
href="mmcif.html">mmCIF</a>. Simply load in the file as you would
an alignment file. The sequences of any protein or nucleotide chains
wwwPDB. If you prefer (for any reason) to download data as PDB files
instead, then first close Jalview, and add the following line to
your .jalview_properties file:<br />
- <code> DEFAULT_STRUCTURE_FORMAT=PDB </code>
+ <code> PDB_DOWNLOAD_FORMAT=PDB </code>
<br /> When this setting is configured, Jalview will only request
PDB format files from EMBL-EBI's PDBe.<br /> <em>mmCIF format
file support was added in Jalview 2.10.</em>