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-<html>
-<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
- * Copyright (C) 2014 The Jalview Authors
- *
- * This file is part of Jalview.
- *
- * Jalview is free software: you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- *
- * Jalview is distributed in the hope that it will be useful, but
- * WITHOUT ANY WARRANTY; without even the implied warranty
- * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
- * PURPOSE. See the GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
- * The Jalview Authors are detailed in the 'AUTHORS' file.
--->
-<head><title>Jalview Documentation</title></head>
-
-<body>
-<IMG src="Jalview_Logo.png">
-<p><strong>Welcome to Jalview's built in documentation.</strong></p>
-<p>Here are some good places to start:</p><ul>
-<li><a href="whatsNew.html">What's New</a> summarises the new features in this release of Jalview.</li>
-<li>Learn how to <a href="editing/index.html">edit alignments</a> with Jalview.</li>
-<li><a href="features/seqfeatures.html">Import and display sequence features on your alignment</a></li>
-<li>Use <a href="features/viewingpdbs.html">Jmol to view and superpose 3D structures</a> associated with sequences in the alignment</li>
-</ul>
- <p>
- For more information, you might also want to take a look at the
- documentation section of the Jalview website (<a
- href="http://www-test.jalview.org/about/documentation">http://www.jalview.org/about/documentation</a>).
- </p>
- <p>
- If you are using the Jalview Desktop application and are looking for
- something specific, then try the search box (next to the print icon).
- If you're already viewing this in your web browser, then google the
- online version of these pages. If you don't find what you are looking
- for, or want to report a bug or make a feature request, then get in
- contact over at <a href="http://www.jalview.org/community">http://www.jalview.org/community</a>
- </p>
-
- <p><strong>Citing Jalview</strong><br/>If you use Jalview in your work, please cite the Jalview 2 paper in Bioinformatics: </p>
-<p>Waterhouse, A.M., Procter, J.B., Martin, D.M.A, Clamp, M., Barton, G.J (2009), <br>
- "Jalview version 2: A Multiple Sequence Alignment and Analysis Workbench,"<br>
- <em>Bioinformatics</em> <strong>25</strong> (9) 1189-1191 doi: 10.1093/bioinformatics/btp033</p>
-</body>
-</html>
git://source.jalview.org / jalview.git / blobdiff