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- <img src="images/align.gif" width="200" height="80" align="baseline"> Jalview \r
- Documentation </h1>\r
-<p align="center">Your guide to Jalview</p>\r
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+<html>
+<head><title>Home Page</title></head>
+
+<body>
+<IMG src="align.jpg"><font size="4">
+<br><br>
+<strong>Jalview Documentation</strong></font>
+<br><br>
+Jalview (2009) is a fast Java multiple alignment editor and analysis tool. It
+features many of the functions of <a href="http://www.compbio.dundee.ac.uk/Software/Amas/amas.html">AMAS</a>,
+for the analysis of sub-families and the prediction of functional sites, but is
+fully interactive. (View the <a href="http://www.jalview.org">Jalview homepage</a>).
+<p></p>
+<p> If you use Jalview in your work, please cite the Jalview 2 paper in Bioinformatics: </p>
+<p>Waterhouse, A.M., Procter, J.B., Martin, D.M.A, Clamp, M., Barton, G.J (2009), <br>
+ "Jalview version 2: A Multiple Sequence Alignment and Analysis Workbench,"<br>
+ <em>Bioinformatics</em> <strong>25</strong> (9) 1189-1191 doi: 10.1093/bioinformatics/btp033
+</body>
+</html>
git://source.jalview.org / jalview.git / blobdiff