<p>Each alignment, whether it is the original or an edited version may be saved\r
in the standard formats using <strong>File→Save As</strong></p>\r
<p><em>Fasta (Pearson), GCG-MSF, ALN/ClustalW, AMPS Block file, NBRF/PIR, Pfam/Stockholm</em></p>\r
+Jalview will by default append the sequence start and end to each sequence name, \r
+in the format /start-end. If you do not want this behaviour for a particular file \r
+output, open the "Output" tab on the Preferences window where you can \r
+select which file formats you want to append the start and end sequence positions \r
+for. \r
<p>You can also save the current set of alignments and their colours, annotations and\r
trees in a Jalview archive file using <strong>Desktop→Save project</strong>. </p>\r
<p> </p>\r