-<html>\r
-<head><title>Input/Output</title></head>\r
-<body>\r
-<p><strong>Input</strong></p>\r
-<p>Jalview can read alignment files in any of the following standard formats:</p>\r
-<p><em>Fasta (Pearson), GCG-MSF, ALN/ClustalW, AMPS Block file, NBRF/PIR, Pfam/Stockholm</em></p>\r
-<p>The EBI has <a href="http://www.ebi.ac.uk/help/formats.html">examples</a> of\r
- these file formats.</p>\r
-<p>Additionally annotated alignments can be read in from the Jalview format. </p>\r
-<p>Use the "Input Alignment" menu at the top of the main application\r
- window to read in files from </p>\r
-<ul>\r
- <li> the local file system</li>\r
- <li>a website URL</li>\r
- <li>or by copying and pasting into the "Cut & Paste" text window</li>\r
-</ul>\r
-<p>If a file is of an unknown format or there is any other error reading the alignment\r
- file you will be given an error message, the alignment will not be read in.\r
-</p>\r
-<p><strong>Output</strong> </p>\r
-<p>Each alignment, whether it is the original or an edited version may be saved\r
- in the standard formats</p>\r
-<p><em>Fasta (Pearson), GCG-MSF, ALN/ClustalW, AMPS Block file, NBRF/PIR, Pfam/Stockholm</em></p>\r
-<p>You may save annotated alignments in the Jalview file format. </p>\r
-<p> </p>\r
-<p><strong>Export<a name="export"></a></strong></p>\r
-<p>The alignment may also be saved as a HTML web page. </p>\r
-<p>You may save a Portable Networks Graphics (PNG) image of your alignment. </p>\r
-<p>You may save the alignment as an Encapsulated Postscript file. This is a vector\r
- graphics file which may be modified in various graphics applications, such as\r
- Adobe Illustrator.<br>\r
- <br>\r
- Tip: When importing to a Microsoft document, a snapshot image is taken of your\r
- file - this will be blurred. Right-click the image and choose "Edit image."\r
- This will restore the high quality EPS file format output. <br>\r
- NB. Mac OSX users will find that eps files are automatically converted into\r
- PDF files. </p>\r
-<p>The alignment can be printed from a local printer.</p>\r
-</body>\r
-</html>\r
+<html>
+<!--
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
+ * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+-->
git://source.jalview.org / jalview.git / blobdiff