T-COFFEE score files like the <a href="#tcoffeeeg">one below</a> can
be displayed on the alignment using the <strong><em>Colours→T-COFFEE
Scores</em></strong> or <strong><em>Colour → <a
- href="../colourSchemes/annotationColouring.html"
- >Colour by Annotation</a></em></strong> options.
+ href="../colourSchemes/annotationColouring.html">Colour
+ by Annotation</a></em></strong> options.
</p>
<img src="../colourSchemes/colbytcoffee.png" />
<p>