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Merge remote-tracking branch 'origin/develop' into features/JAL-2388OverviewWindow
[jalview.git] / help / html / io / tcoffeescores.html
diff --git a/help/html/io/tcoffeescores.html b/help/html/io/tcoffeescores.html
index 5bc6f7d..e67e3af 100644 (file)
--- a/help/html/io/tcoffeescores.html
+++ b/help/html/io/tcoffeescores.html
@@ -1,7 +1,7 @@
 <html>
 <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
- * Copyright (C) 2015 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -30,8 +30,8 @@
     T-COFFEE score files like the <a href="#tcoffeeeg">one below</a> can
     be displayed on the alignment using the <strong><em>Colours&rarr;T-COFFEE
         Scores</em></strong> or <strong><em>Colour &rarr; <a
-        href="../colourSchemes/annotationColouring.html"
-      >Colour by Annotation</a></em></strong> options.
+        href="../colourSchemes/annotationColouring.html">Colour
+          by Annotation</a></em></strong> options.
   </p>
   <img src="../colourSchemes/colbytcoffee.png" />
   <p>
@@ -79,6 +79,20 @@ cons   999999999999999999999999999851000110321100001134
 1QCF   ----------6878742356789999999999889
 cons   00100000006877641356789999999999889
 </pre>
-
+<table border="1">
+<tr><th>Score</th><th>0</th><th>1</th><th>2</th><th>3</th><th>4</th><th>5</th><th>6</th><th>7</th><th>8</th><th>9</th></tr>
+<tr>
+<td>RGB colour</td>
+<td bgcolor="#6666FF">102, 102, 255</td>
+<td bgcolor="#00FF00">0, 255, 0</td>
+<td bgcolor="#66FF00">102, 255, 0</td>
+<td bgcolor="#CCFF00">204, 255, 0</td>
+<td bgcolor="#FFFF00">255, 255, 0</td>
+<td bgcolor="#FFCC00">255, 204, 0</td>
+<td bgcolor="#FF9900">255, 153, 0</td>
+<td bgcolor="#FF6600">255, 102, 0</td>
+<td bgcolor="#FF3300">255, 51, 0</td>
+<td bgcolor="#FF2000">255, 34, 0</td></tr>
+</table>
 </body>
 </html>