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<head>
<title>T-COFFEE Annotation Scores</title>
</head>
<body>
-<p><strong>Loading and viewing T-COFFEE Annotation Scores</strong></p>
-<p>T-COFFEE score files like the <a href="#tcoffeeeg">one below</a> can be displayed on the alignment using the <strong><em>Colours→T-COFFEE Scores</em></strong>
-or <strong><em>Colour → <a href="../colourSchemes/annotationColouring.html">Colour by Annotation</a></em></strong> options.</p>
-<img src="../colourSchemes/colbytcoffee.png"/>
-<p><strong><a name="tcoffeeeg">Example T-COFFEE Score file</a></strong><br/>
-T-COFFEE score files like the one below can be dropped directly onto the corresponding alignment to visualize alignment confidence scores.
-</p>
-<pre>
+ <p>
+ <strong>Loading and viewing T-COFFEE Annotation Scores</strong>
+ </p>
+ <p>
+ T-COFFEE score files like the <a href="#tcoffeeeg">one below</a> can
+ be displayed on the alignment using the <strong><em>Colours→T-COFFEE
+ Scores</em></strong> or <strong><em>Colour → <a
+ href="../colourSchemes/annotationColouring.html">Colour
+ by Annotation</a></em></strong> options.
+ </p>
+ <img src="../colourSchemes/colbytcoffee.png" />
+ <p>
+ <strong><a name="tcoffeeeg">Example T-COFFEE Score file</a></strong><br />
+ T-COFFEE score files like the one below can be dropped directly onto
+ the corresponding alignment to visualize alignment confidence
+ scores.
+ </p>
+ <pre>
T-COFFEE, Version_9.02.r1228 (2012-02-16 18:15:12 - Revision 1228 - Build 336)
Cedric Notredame
CPU TIME:0 sec.
1QCF ----------6878742356789999999999889
cons 00100000006877641356789999999999889
</pre>
-
+<table border="1">
+<tr><th>Score</th><th>0</th><th>1</th><th>2</th><th>3</th><th>4</th><th>5</th><th>6</th><th>7</th><th>8</th><th>9</th></tr>
+<tr>
+<td>RGB colour</td>
+<td bgcolor="#6666FF">102, 102, 255</td>
+<td bgcolor="#00FF00">0, 255, 0</td>
+<td bgcolor="#66FF00">102, 255, 0</td>
+<td bgcolor="#CCFF00">204, 255, 0</td>
+<td bgcolor="#FFFF00">255, 255, 0</td>
+<td bgcolor="#FFCC00">255, 204, 0</td>
+<td bgcolor="#FF9900">255, 153, 0</td>
+<td bgcolor="#FF6600">255, 102, 0</td>
+<td bgcolor="#FF3300">255, 51, 0</td>
+<td bgcolor="#FF2000">255, 34, 0</td></tr>
+</table>
</body>
-</html>
\ No newline at end of file
+</html>