JAL-3199 'Sort Annotations by...' now a one-off action, not a 'state'

[jalview.git] / help / html / menus / alignmentMenu.html

diff --git a/help/html/menus/alignmentMenu.html b/help/html/menus/alignmentMenu.html
index f3ab75d..18cff25 100755 (executable)
--- a/help/html/menus/alignmentMenu.html
+++ b/help/html/menus/alignmentMenu.html
@@ -357,9 +357,7 @@
             alignment (and within that, by label).</em></li>
         <li><strong>Sort by Label</strong><em><br>Sort
             sequence-specific annotations by label (and within that, by
-            sequence order). If neither sort order is selected, no
-            sorting is applied, allowing you to make a manual ordering
-            of the annotations.</em></li>
+            sequence order).</em></li>
         <li><strong>Autocalculated Annotation<br>
         </strong><em>Settings for the display of autocalculated annotation.</em>
           <ul>
@@ -483,7 +481,13 @@
       </strong> <em>See <a href="../colourSchemes/index.html">colours</a>
           for a description of all colour schemes.
       </em><br></li>
-      <li><strong>By Conservation<br>
+        <li><strong>Sequence ID<br></strong><em>Shades
+            sequences using their Sequence ID colour. Useful when
+            performing <a
+            href="../calculations/treeviewer.html#partitioning">tree
+              based subfamily analysis</a>.
+        </em></li>
+        <li><strong>By Conservation<br>
       </strong><em>See <a href="../colourSchemes/conservation.html">Colouring
             by Conservation</a>.
       </em><br></li>