<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
*
* Jalview is free software: you can redistribute it and/or
* modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
*
* Jalview is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty
* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
* PURPOSE. See the GNU General Public License for more details.
*
- * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
* The Jalview Authors are detailed in the 'AUTHORS' file.
--->
+ -->
<head>
<title>Alignment Window Menus</title>
</head>
</li>
<li><strong>Load Associated Tree<br> </strong><em>Jalview
can <a href="../calculations/treeviewer.html">view trees</a>
- stored in the Newick file format, and associate them with the
+ stored in the Newick file format, and associate them with the
alignment. Note: the ids of the tree file and your alignment MUST
be the same.</em></li>
<li><strong>Load Features / Annotations<br> </strong><em>Load
conservation calculation, quality calculation and consensus values
as bar charts. </em>
</li>
+ <li><strong>Show All Annotations</strong><em><br>
+ Show all available annotations on the alignment. You can selectively hide these from the <a href="./popupMenu.html">Popup</a>
+ or <a href="../features/annotation.html">Annotation</a> menus. (Since Jalview 2.8.2)</em></li>
+ <li><strong>Hide All Annotations</strong><em><br>
+ Hide all annotations on the alignment. (Since Jalview 2.8.2)</em></li>
<li><strong>Autocalculated Annotation<br> </strong><em>Settings
for the display of autocalculated annotation.</em>
<ul>
<li><strong>Show Sequence Features</strong><br> <em>Show
or hide sequence features on this alignment.</em>
</li>
- <li><strong><a href="../features/featuresettings.html">Seqence
+ <li><strong><a href="../features/featuresettings.html">Sequence
Feature Settings...</a> </strong><em><br> <em>Opens the
Sequence Feature Settings dialog box to control the colour and
display of sequence features on the alignment, and configure and
git://source.jalview.org / jalview.git / blobdiff