Add copy consensus sequence

[jalview.git] / help / html / menus / alwannotations.html

diff --git a/help/html/menus/alwannotations.html b/help/html/menus/alwannotations.html
index e8a64f6..546a94a 100755 (executable)
--- a/help/html/menus/alwannotations.html
+++ b/help/html/menus/alwannotations.html
@@ -20,15 +20,18 @@
         up the menu.</em> </li>\r
       <li><strong>Show All Hidden Rows</strong><br>\r
         <em>Shows all hidden annotation rows.</em> </li>\r
-      <li><strong>Show Values in Text Box</strong><br>\r
-        <em>Opens a text box with a list of comma-separated values corresponding \r
-        to the annotation (numerical or otherwise) at each position in the row. \r
-        This is useful to export alignment quality measurements for further analysis.</em> \r
-      </li>\r
+      <li><strong>Export Annotation</strong><br>\r
+        <em>Annotations can be saved to file or output to a text window in the \r
+        Jalview annotations format. </em> </li>\r
       <li><strong>Ignore Gaps in Consensus</strong><br>\r
-        If this checkbox is selected, all consensus calculations performed in the \r
-        current Alignment window will be done without counting gaps as\r
-        a consensus character.</li>\r
+        If this checkbox is selected, all consensus calculations performed in \r
+        the current Alignment window will be done without counting gaps as a consensus \r
+        character.</li>\r
+      <li><strong>Copy Consensus Sequence</strong><br>\r
+        Copies the consensus sequence to the clipboard in Fasta format, to allow \r
+        the consensus sequence to be added to an alignment. Note the copied sequence \r
+        is not accessible to other programs if Jalview is running as an applet \r
+        in a web page.</li>\r
     </ul>\r
   </li>\r
   <li><strong>Annotation Popup Menu<br>\r