up the menu.</em> </li>\r
<li><strong>Show All Hidden Rows</strong><br>\r
<em>Shows all hidden annotation rows.</em> </li>\r
- <li><strong>Show Values in Text Box</strong><br>\r
- <em>Opens a text box with a list of comma-separated values corresponding \r
- to the annotation (numerical or otherwise) at each position in the row. \r
- This is useful to export alignment quality measurements for further analysis.</em> \r
- </li>\r
+ <li><strong>Export Annotation</strong><br>\r
+ <em>Annotations can be saved to file or output to a text window in the \r
+ Jalview annotations format. </em> </li>\r
<li><strong>Ignore Gaps in Consensus</strong><br>\r
- If this checkbox is selected, all consensus calculations performed in the \r
- current Alignment window will be done without counting gaps as\r
- a consensus character.</li>\r
+ If this checkbox is selected, all consensus calculations performed in \r
+ the current Alignment window will be done without counting gaps as a consensus \r
+ character.</li>\r
+ <li><strong>Copy Consensus Sequence</strong><br>\r
+ Copies the consensus sequence to the clipboard in Fasta format, to allow \r
+ the consensus sequence to be added to an alignment. Note the copied sequence \r
+ is not accessible to other programs if Jalview is running as an applet \r
+ in a web page.</li>\r
</ul>\r
</li>\r
<li><strong>Annotation Popup Menu<br>\r