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- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
+ * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
*
This is useful to export alignment quality measurements for further analysis.</em>
</li>
</ul>
- <em>The following additional entries are avalable when the popup menu is opened on a consensus sequence annotation row:</em>
+ <em>The following additional entries are available when the popup menu is opened on a consensus sequence annotation row:</em>
<ul>
+
<li><strong>Ignore Gaps in Consensus</strong><br>
If this checkbox is selected, all consensus calculations performed in
the current Alignment window will be done without counting gaps as a consensus
character.</li>
+ <li><strong>Show Consensus Histogram<br></strong>
+ Enable or disable the display of the histogram above the consensus sequence.
+ </li>
+ <li>
+ <strong>Show Consensus Logo<br></strong>
+ Enable or disable the display of the sequence logo above the consensus sequence.
+ </li>
+ <li><strong>Normalise Consensus Logo<br>
+ </strong><em>When enabled, scales all logo stacks to the same height,
+ making it easier to compare symbol diversity in highly variable
+ regions.</em></li>
+
+ <li>
<li><strong>Copy Consensus Sequence</strong><br>
Copies the consensus sequence to the clipboard in Fasta format, to allow
the consensus sequence to be added to an alignment. Note the copied sequence
git://source.jalview.org / jalview.git / blobdiff