updated menus and rearranged seqfeatures (again)

[jalview.git] / help / html / menus / alwedit.html

diff --git a/help/html/menus/alwedit.html b/help/html/menus/alwedit.html
index 4e0c8b0..e3d1958 100755 (executable)
--- a/help/html/menus/alwedit.html
+++ b/help/html/menus/alwedit.html
@@ -82,8 +82,11 @@
     is discarded. Press the "Apply" button to remove redundant sequences. \r
     The &quot;Undo&quot; button will undo the last redundancy deletion.</em></li>\r
   <li><strong>Pad Gaps<br>\r
-    </strong><em>Adds gaps to the end of all the sequences so they are all the \r
-    same length. This is useful for making a tree using unaligned sequences.<br>\r
+    </strong><em>When selected, the alignment will be kept at minimal\r
+    width (no empty columns before or after the first or last aligned\r
+    residue). This is useful when making a tree using unaligned\r
+    sequences and when working with alignment analysis programs which\r
+    require 'properly aligned sequences' to be all the same length.<br>\r
     You may set the default gap character in <a href="../features/preferences.html">preferences</a>. \r
     </em></li>\r
 </ul>\r