Add sequences to the visible alignment from file, URL, or cut &
paste window </em></li>
<li><strong>Reload</strong><em><br>
- Reloads the alignment from the original file, if available.<br><strong>Warning:
- This will delete any edits, analyses and colourings applied since the
- alignment was last saved, and cannot be undone.</strong></em></li>
+ Reloads the alignment from the original file, if available.<br>
+ <strong>Warning: This will delete any edits, analyses and
+ colourings applied since the alignment was last saved, and cannot be
+ undone.</strong></em></li>
<li><strong>Save (Control S)</strong><em><br>
Saves the alignment to the file it was loaded from (if available), in
the same format, updating the original in place. </em></li>
open, use the "Files of type:" selection box to determine
which <a href="../io/index.html">alignment format</a> to save as.</em></li>
<li><strong>Output to Textbox<br>
- </strong><em>The alignment will be displayed in plain text in a new window
+ </strong><em>The alignment will be displayed in plain text in a new window,
which you can "Copy and Paste" using the pull down menu, or
- your standard operating system copy and paste keys. <br>
+ your standard operating system copy and paste keys. The output window
+ also has a <strong>"New Window"</strong> button to import the
+ (possibly edited) text as a new alignment.<br>
Select the format of the text by selecting one of the following menu
items.</em>
<ul>
the number of residues per line of your alignment will depend on the
paper width or your alignment window width, whichever is the smaller. </em></li>
<li><strong>Export Image</strong> <em><br>
- Creates an alignment graphic with the current view's annotation, alignment
- background colours and group colours. If the alignment is <a
+ Creates an alignment graphic with the current view's annotation,
+ alignment background colours and group colours. If the alignment is <a
href="../features/wrap.html">wrapped</a>, the output will also be
wrapped and will have the same visible residue width as the open
alignment. </em>