Load tree from file constructor fixed

[jalview.git] / help / html / menus / alwview.html

diff --git a/help/html/menus/alwview.html b/help/html/menus/alwview.html
index 6088546..d83d105 100755 (executable)
--- a/help/html/menus/alwview.html
+++ b/help/html/menus/alwview.html
@@ -10,7 +10,13 @@
   <ul>\r
     <li><strong>Font<br>\r
       </strong><em>Change the font of the display from the &quot;Choose Font&quot; \r
-      dialog box, which is shown when this item is selected. <br>\r
+      dialog box, which is shown when this item is selected. Select a &quot;Monospaced&quot; \r
+      font for fast rendering of your alignment. The checkbox labelled &quot;Monospaced&quot; \r
+      indicates whether the chosen font uses characters all of the same width.<br>\r
+      </em></li>\r
+    <li><strong>Smooth Fonts</strong><em><br>\r
+      If selected, the alignment will be drawn with anti-aliasing on which looks \r
+      better, but performace is reduced.<br>\r
       </em></li>\r
     <li><strong>Wrap<br>\r
       </strong><em>When ticked, the alignment display is &quot;<a href="../features/wrap.html">wrapped</a>&quot; \r
@@ -51,7 +57,7 @@
       displayed below the alignment. The default setting is to display the conservation \r
       calculation, quality calculation and consensus values as bar charts. </em><br>\r
     </li>\r
-    <li><strong>Sequence Features<br>\r
+    <li><strong>Fetch Sequence Features<br>\r
       </strong><em>If the sequence names are Swissprot entries Jalview will use \r
       the names to retrieve <a href="../features/seqfeatures.html">sequence features</a> \r
       from the EBI. Features which are 1 residue in length are coloured red, sequences \r
@@ -60,10 +66,12 @@
       Note: The retrieved information will update the sequence start and end labels \r
       if they are incorrect. </em><br>\r
     </li>\r
-    <li><strong>Seqence Settings </strong><em><br>\r
-      <em>If features have been added to the alignment then the priority of rendering \r
-      the features can be altered so that overlapping features can be displayed \r
-      or hidden. See <a href="features/seqfeatures.html">Sequence Features</a>.</em><br>\r
+    <li><strong>Show Sequence Features</strong><br><em>Show or\r
+        hide sequence features on this alignment.</em></li>\r
+    <li><strong>Seqence Feature Settings...</strong><em><br>\r
+      <em>Control the colour and display of sequence features on the\r
+      alignment. See <a\r
+      href="../features/featuresettings.html">Sequence Feature Settings</a>.</em><br>\r
       </em></li>\r
     <li><strong><a href="../features/overview.html">Overview Window</a><br>\r
       </strong><em>A scaled version of the alignment will be displayed in a small \r