<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
*
* Jalview is free software: you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- *
+ *
* Jalview is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty
* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
* PURPOSE. See the GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
-->
+<head>
+<title>Jalview's Menus</title>
+</head>
+
+<body>
+<p><strong>Jalview's Menus</strong></p>
+<p>Menus are used in 3 places in Jalview - the "Desktop
+Menu", the "Alignment Menu" and the "Popup
+Menu".</p>
+<p>The <a href="desktopMenu.html">Desktop Menu</a> is always visible
+and is the starting point for loading new alignments.</p>
+<p>The <a href="alignmentMenu.html">Alignment Window Menus</a> are
+accessible once an alignment has been opened.</p>
+<p>The <a href="popupMenu.html">Popup Menus</a> are opened by
+clicking with the right mouse button in the alignment display area or on
+a sequence label in the alignment window.</p>
+<p>The <a href="alwannotations.html">Annotations Menu</a> is opened
+by right-clicking on an annotation row label or in an annotation row.</p>
+
+</body>
+</html>