<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
*
* Jalview is free software: you can redistribute it and/or
* modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
*
* Jalview is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty
* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
* PURPOSE. See the GNU General Public License for more details.
*
- * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
* The Jalview Authors are detailed in the 'AUTHORS' file.
--->
+ -->
<head>
<title>Popup Menu</title>
</head>
<ul>
<li><strong>Selection</strong>
<ul>
- <li><a name="sqreport"><strong>Sequence Details ...<br>
+ <li><a name="sqreport"><strong>Sequence Details...<br>
</strong></a><em>(Since Jalview 2.8)<br>Open an <a href="../io/exportseqreport.html">HTML report containing the annotation
- and database cross references</a> normally shown in the sequence's
+ and database cross references</a> normally shown in the sequence's
tooltip.</em></li>
+ <li><strong>Show Annotations...<br>
+ </strong><em>Choose to show (unhide) either All or
+ a selected type of annotation for the selected sequences. (Since Jalview 2.8.2)</em></li>
+ <li><strong>Hide Annotations...<br>
+ </strong><em>Choose to hide either All or
+ a selected type of annotation for the selected sequences. (Since Jalview 2.8.2)</em></li>
+ <li><strong>Add Reference Annotations...<br>
+ </strong><em>Add to the alignment window any annotations on the selected sequences
+ which have been read from reference sources or calculated (for example,
+ secondary structure derived from 3D structure). (Since Jalview 2.8.2)</em></li>
<li><strong>Edit </strong>
<ul>
<li><strong>Copy</strong><br>
- <em>Copys the selected region. In the applet version, the copied sequences
+ <em>Copies the selected region. In the applet version, the copied sequences
are not available to the system clipboard.</em></li>
<li><strong>Cut<br>
</strong><em>Cuts the selected region from the alignment. In the applet
(The View representative structures option was introduced in
Jalview 2.8.1)</em></li>
</ul>
- <br> <li>
-
- </li>
+ <br>
</ul>
</li>
<li><strong>Hide Sequences</strong><br>