2.08.1

[jalview.git] / help / html / menus / popupMenu.html

diff --git a/help/html/menus/popupMenu.html b/help/html/menus/popupMenu.html
index faf98e9..940e3cf 100755 (executable)
--- a/help/html/menus/popupMenu.html
+++ b/help/html/menus/popupMenu.html
@@ -7,7 +7,7 @@
   on the alignment or on a selected sequence name. It may not be\r
   accessible when in 'Cursor Mode' (toggled with the F2 key).</em></p>\r
 <ul>\r
-  <li><strong>Define </strong> \r
+  <li><strong>Define</strong> \r
     <ul>\r
       <li><strong>Group<br>\r
         </strong><em>This will display a window asking for the name of the currently \r
@@ -35,8 +35,32 @@
         </strong></li>\r
       <li><strong>Border Colour <br>\r
         </strong><em>Selecting this will display a &quot;Colour Chooser&quot; \r
-        window. Select a colour than press OK to set the border colour of a group.</em><strong><br>\r
+        window. Select a colour than press OK to set the border colour of a group.<br>\r
+        </em></li>\r
+    </ul>\r
+  </li>\r
+  <li><strong>Edit </strong> \r
+    <ul>\r
+      <li><strong>Copy</strong><br>\r
+        <em>Copys the selected region. In the applet version, the copied sequences \r
+        are not available to the system clipboard.</em> <br>\r
+      </li>\r
+      <li><strong>Cut<br>\r
+        </strong><em>Cuts the selected region from the alignment. In the applet \r
+        version, the copied sequences are not available to the system clipboard.</em> \r
+        <em><br>\r
+        </em></li>\r
+      <li><strong>To Lower Case<br>\r
+        </strong><em>Changes the case of selected region to upper case.</em><strong><br>\r
         </strong></li>\r
+      <li><strong>To Upper Case<br>\r
+        </strong><em>Changes the case of selected region to lower case.</em><strong><br>\r
+        </strong></li>\r
+      <li><strong>Toggle Case</strong><br>\r
+        <em>Switches the case of all residues within the selected region.</em> \r
+        <br>\r
+        <br>\r
+      </li>\r
     </ul>\r
   </li>\r
   <li><strong>Sequence <br>\r
@@ -50,15 +74,12 @@
         you must save in Fasta, PIR or Jalview File format.</em><strong><br>\r
         </strong></li>\r
       <li><strong>View PDB Structure<br>\r
-        </strong><em>\r
-        If the sequence has a PDB file associated with it Jalview will display \r
-        a 3D interactive viewer of the file.<br>\r
-This entry is only present if the sequence has an\r
-  <a href="../features/viewingpdbs.html">associated PDB structure</a>.\r
-  If you can't see this entry for your sequence, and the sequence name\r
-  is a uniprot identifier, then try enabling the &quot;View \r
-        -&gt; Sequence Features&quot; and opening the popup menu again.</em>\r
-        </li>\r
+        </strong><em> If the sequence has a PDB file associated with it Jalview \r
+        will display a 3D interactive viewer of the file.<br>\r
+        This entry is only present if the sequence has an <a href="../features/viewingpdbs.html">associated \r
+        PDB structure</a>. If you can't see this entry for your sequence, and \r
+        the sequence name is a uniprot identifier, then try enabling the &quot;View \r
+        -&gt; Sequence Features&quot; and opening the popup menu again.</em> </li>\r
     </ul>\r
   </li>\r
   <li><strong><em>Link</em></strong><br>\r