+++ /dev/null
-<html>\r
-<head><title>Popup Menu</title></head>\r
-\r
-<body>\r
-<p><strong>Popup Menu</strong><br>\r
- <em>This menu is visible when right clicking either within a selected region \r
- on the alignment or on a selected sequence name.</em></p>\r
-<ul>\r
- <li><strong>Define </strong> \r
- <ul>\r
- <li><strong>Group<br>\r
- </strong><em>This will display a window asking for the name of the currently \r
- selected group. Click OK to set the name, cancel to use the default group \r
- name. </em><strong><br>\r
- </strong></li>\r
- <li><strong>Remove Group<br>\r
- </strong><em>This will undefine the selected group. </em><strong> <br>\r
- </strong></li>\r
- <li><strong>Group Colour<br>\r
- </strong><em>Sets the <a href="../colourSchemes/index.html">colour</a> \r
- of the group.</em><strong> <br>\r
- </strong></li>\r
- <li><strong>Boxes<br>\r
- </strong><em>If selected the background of a residue within the selected \r
- group will be coloured according to the assigned colour scheme.</em><strong> \r
- <br>\r
- </strong></li>\r
- <li><strong> Text<br>\r
- </strong><em>If selected the selected group will display text. </em><strong><br>\r
- </strong></li>\r
- <li><strong>Colour Text<br>\r
- </strong><em>If selected the selected group will display text in a colour \r
- slightly darker than the background colour of that residue.</em><strong><br>\r
- </strong></li>\r
- <li><strong>Border Colour <br>\r
- </strong><em>Selecting this will display a "Colour Chooser" \r
- window. Select a colour than press OK to set the border colour of a group.</em><strong><br>\r
- </strong></li>\r
- </ul>\r
- </li>\r
- <li><strong>Sequence <br>\r
- </strong><em>This menu is only visible if you right-click on a sequence name. \r
- </em> \r
- <ul>\r
- <li><strong>Edit Name<br>\r
- </strong><em>You may edit the name of each sequence. A window will be \r
- displayed asking for a new sequence name to be entered. Press OK to accept \r
- your edit.</em><strong><br>\r
- </strong></li>\r
- <li><strong>View PDB Structure<br>\r
- </strong><em>In the current version you will first need to select "View \r
- -> Sequence Features" before associating a PDB file with a sequence. \r
- <br>\r
- If the sequence has a PDB file associated with it Jalview will display \r
- a 3D interactive viewer of the file. </em><strong><br>\r
- <br>\r
- </strong></li>\r
- </ul>\r
- </li>\r
-</ul>\r
-</body>\r
-</html>\r