Editing tab

[jalview.git] / help / html / menus / popupMenu.html

diff --git a/help/html/menus/popupMenu.html b/help/html/menus/popupMenu.html
index 14dc178..d4b8b5f 100755 (executable)
--- a/help/html/menus/popupMenu.html
+++ b/help/html/menus/popupMenu.html
@@ -42,21 +42,30 @@
     </strong><em>This menu is only visible if you right-click on a sequence name. \r
     </em> \r
     <ul>\r
-      <li><strong>Edit Name<br>\r
-        </strong><em>You may edit the name of each sequence. A window will be \r
-        displayed asking for a new sequence name to be entered. Press OK to accept \r
-        your edit.</em><strong><br>\r
+      <li><strong>Edit Name/Description<br>\r
+        </strong><em>You may edit the name and description of each sequence. A \r
+        window will be displayed asking for a new sequence name and sequence description \r
+        to be entered. Press OK to accept your edit. To save sequence descriptions, \r
+        you must save in Fasta, PIR or Jalview File format.</em><strong><br>\r
         </strong></li>\r
       <li><strong>View PDB Structure<br>\r
-        </strong><em>In the current version you will first need to select &quot;View \r
-        -&gt; Sequence Features&quot; before associating a PDB file with a sequence. \r
-        <br>\r
+        </strong><em>\r
         If the sequence has a PDB file associated with it Jalview will display \r
-        a 3D interactive viewer of the file. </em><strong><br>\r
-        <br>\r
-        </strong></li>\r
+        a 3D interactive viewer of the file.<br>\r
+This entry is only present if the sequence has an\r
+  <a href="../features/viewingpdbs.html">associated PDB structure</a>.\r
+  If you can't see this entry for your sequence, and the sequence name\r
+  is a uniprot identifier, then try enabling the &quot;View \r
+        -&gt; Sequence Features&quot; and opening the popup menu again.</em>\r
+        </li>\r
     </ul>\r
   </li>\r
+  <li><strong><em>Link</em></strong><br>\r
+    <em>This menu item lists all links which have been set up in the <a href="../features/preferences.html">Preferences</a> \r
+    Connections tab. It is only displayed when you right click (Apple click) on \r
+    a sequence id. </em><strong><br>\r
+    <br>\r
+    </strong></li>\r
 </ul>\r
 </body>\r
 </html>\r