+#-------------------------------------------------------------------------------
+# Jalview - A Sequence Alignment Editor and Viewer (Version 2.5.1)
+# Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+#
+# This file is part of Jalview.
+#
+# Jalview is free software: you can redistribute it and/or
+# modify it under the terms of the GNU General Public License
+# as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+#
+# Jalview is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the implied warranty
+# of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+# PURPOSE. See the GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+#-------------------------------------------------------------------------------
<html>
+<!--
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
+ * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+-->
<head><title>Web Service Menu</title></head>
<body>
<em>This will use any of the database services that Jalview is aware
of (e.g. DAS sequence servers and the WSDBFetch service provided by the EBI)
to verify the sequence and retrieve all database cross references and PDB ids
- associated with all or just the selected sequences in the alignment.</em><br>
+ associated with all or just the selected sequences in the alignment.
+ <br/>'Standard Databases' will check sequences against the EBI databases
+ plus any active DAS sequence sources, or you can verify against a specific
+ source from one of the sub-menus.</em><br>
+ </li>
+ <li><strong>Envision2 Services</strong><br/>
+ Submits one or more sequences, sequence IDs or database references to analysis workflows provided
+by the <a href="http://www.ebi.ac.uk/enfin-srv/envision2">EnVision2
+web application</a>. This allows Jalview users to easily access the EnCore network of
+databases and analysis services developed by members of <a href="http://www.enfin.org">ENFIN</a>.
</li>
</ul>
</strong> <em>Selecting one of the following menu items starts a remote service
with clustal W.</em></li>
<li><strong>ClustalW Multiple Sequence Alignment Realign</strong><br>
<em> Submits the alignment or currently selected region for re-alignment
- with clustal W. Use this if you have added some new sequences to an existing
- alignment.</em></li>
+ with clustal W. This enables you to align more sequences to an existing alignment.</em></li>
<li><strong>MAFFT Multiple Sequence Alignment</strong><br>
<em>Submits all, or just the currently selected region for alignment with
MAFFT. </em> </li>
git://source.jalview.org / jalview.git / blobdiff