<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
*
* This file is part of Jalview.
*
* Jalview is free software: you can redistribute it and/or
* modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- *
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
* Jalview is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty
* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
* PURPOSE. See the GNU General Public License for more details.
*
- * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
--->
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ -->
+<head>
+<style>
+body {
+ font-size: 100%;
+}
+table {
+ border: solid;
+ border-collapse: separate;
+}
+th, td {
+ border-style:none;
+ font-family: "Courier New", Courier, mono;
+ font-size: large;
+}
+</style><title>Amino Acid Properties</title>
+</head>
+<body>
+ <div align="center">
+ <h1>Amino Acid Properties</h1>
+ <img src="properties.gif"> <br>
+ <table>
+ <tr><th>ILVCA</th><th>GMFYW</th><th>HKREQ</th><th>DNSTP</th><th>BZX-</th><th></th></tr>
+ <tr><td>XXXXX</td><td>XXXXX</td><td>XX···</td><td>···X·</td><td>··XX</td><td>Hydrophobic</td></tr>
+<tr><td>·····</td><td>···XX</td><td>XXXXX</td><td>XXXX·</td><td>XXXX</td><td>Polar</td></tr>
+<tr><td>··XXX</td><td>X····</td><td>·····</td><td>XXXXX</td><td>··XX</td><td>Small</td></tr>
+<tr><td>·····</td><td>·····</td><td>·····</td><td>····X</td><td>··XX</td><td>Proline</td></tr>
+<tr><td>····X</td><td>X····</td><td>·····</td><td>··X··</td><td>··XX</td><td>Tiny</td></tr>
+<tr><td>XXX··</td><td>·····</td><td>·····</td><td>·····</td><td>··XX</td><td>Aliphatic</td></tr>
+<tr><td>·····</td><td>··XXX</td><td>X····</td><td>·····</td><td>··XX</td><td>Aromatic</td></tr>
+<tr><td>·····</td><td>·····</td><td>XXX··</td><td>·····</td><td>··XX</td><td>Positive</td></tr>
+<tr><td>·····</td><td>·····</td><td>···X·</td><td>X····</td><td>··XX</td><td>Negative</td></tr>
+<tr><td>·····</td><td>·····</td><td>XXXX·</td><td>X····</td><td>··XX</td><td>Charged</td></tr>
+ </table>
+ </font>
+ </div>
+ <p>
+ <br> From Livingstone, C. D. and Barton, G. J. (1993), <br>
+ "Protein Sequence Alignments: A Strategy for the Hierarchical
+ Analysis of Residue Conservation", Comp. Appl. Bio. Sci., 9,
+ 745-756.
+ </p>
+ <br>
+ </div>
+</body>
+</html>
git://source.jalview.org / jalview.git / blobdiff