JAL-2418 new features in release notes JAL-1933 JAL-2375

[jalview.git] / help / html / releases.html

diff --git a/help/html/releases.html b/help/html/releases.html
index 23155d3..10d5781 100755 (executable)
--- a/help/html/releases.html
+++ b/help/html/releases.html
@@ -76,8 +76,25 @@ li:before {
       <td><div align="left">
           <em>General</em>
           <ul>
-                 <li><!-- JAL-2379 -->Revised implementation of PCA for speed and memory efficiency (~30x faster)</li>
-                 <li><!-- JAL-2500 -->Trees computed on Sequence Feature Similarity may have different topology due to increased precision</li>
+            <li>
+              <!-- JAL-2379 -->Revised implementation of PCA for speed
+              and memory efficiency (~30x faster)
+            </li>
+            <li>
+              <!-- JAL-2403 -->Revised implementation of sequence
+              similarity scores as used by Tree, PCA, Shading Consensus
+              and other calculations
+              <ul>
+                <li>
+                  <!-- JAL-2416 -->Score matrices are stored as resource
+                  files within the Jalview codebase
+                <li>
+                  <!-- JAL-2500 -->Trees computed on Sequence Feature
+                  Similarity may have different topology due to
+                  increased precision
+                </li>
+              </ul>
+            </li>
             <li>
               <!-- JAL-2360,JAL-2371, -->More robust colours and shader
               model for alignments and groups
@@ -116,6 +133,10 @@ li:before {
               <!-- JAL-2631 -->Graduated feature colour style example
               included in the example feature file
             </li>
+            <li>
+              <!-- JAL-1933 -->Occupancy annotation row shows number of
+              ungapped positions in each column of the alignment.
+            </li>
           </ul>
           <em>Application</em>
           <ul>
@@ -145,6 +166,9 @@ li:before {
               <!-- JAL-2416 -->Drag and drop load of AAIndex and NCBI
               format sequence substitution matrices
             </li>
+            <li>
+            <!-- JAL-2375 -->Structure chooser automatically shows Cached Structures rather than querying the PDBe if structures are already available for sequences
+            </li>
           </ul>
           <em>Experimental features</em>
           <ul>
@@ -169,6 +193,20 @@ li:before {
               <!-- JAL-2326 -->Prevent or clear modal dialogs raised
               during tests
             </li>
+            <li>
+              <!--  --> <em>Scripting</em>
+              <ul>
+                <li>
+                  <!-- JAL-2344 -->FileFormatI interface for describing
+                  and identifying file formats (instead of String
+                  constants)
+                </li>
+                <li>
+                  <!-- JAL- -->
+                </li>
+
+
+              </ul>
           </ul>
         </div></td>
       <td><div align="left">