<li>JPred3 web service</li>
<li>Generalised database reference retrieval and validation to
all fetchable databases</li>
+ <li>Fetch sequences from DAS sources supporting the sequence command</li>
+ <li>Sequence Fetcher GUI provides example accession numbers and 'clear' button</li>
<li>Application command line
<ul>
<li>-tree parameter to open trees (introduced for passing from
<li>Debug flag for javacc</li>
<li>.jalview_properties file is documented (slightly) in
jalview.bin.Cache</li>
+ <li>Group colour can be given as an RGB triplet which is used to colour all non-gap characters</li>
+ <!-- <li>DAS Sequence Retrieval (in progress)</li> -->
</ul>
</td>
<td>
null pointer exceptions</li>
<li>Secondary structure lines are drawn starting from first
column of alignment</li>
+ <li>Uniprot XML import updated for new schema release in July 2008</li>
+ <!--<li>DAS Histogram Features display ( (Prlic et al) </li>-->
+
</ul>
</td>
</tr>