JAL-2065 release notes

[jalview.git] / help / html / releases.html

diff --git a/help/html/releases.html b/help/html/releases.html
index 94323f2..2583082 100755 (executable)
--- a/help/html/releases.html
+++ b/help/html/releases.html
@@ -58,6 +58,9 @@
             <li><!-- JAL---></li>
             <li><!-- JAL-2027-->Support for reverse-complement coding regions in ENA and EMBL</li>
             <li><!-- JAL-1855, JAL-2113, JAL-2114-->Upgrade to EMBL XML 1.2 for ENA record retrieval</li>
+            <li><!--  JAL 1812 -->New 'execute Groovy script' option in an alignment window's Calculate menu</li>
+            <li><!--  JAL 1812 -->Allow groovy scripts that call Jalview.getAlignFrames() to run in headless mode</li>
+             
         </ul> <em>Applet</em>
         <ul>
             <li><!-- JAL---></li>
@@ -71,13 +74,20 @@
             <li><!-- JAL-1722, JAL-2001-->More responsive when working with big alignments and lots of hidden columns</li>
             <li><!-- JAL-2053-->hidden column markers not always rendered at right of alignment window</li>
             <li><!-- JAL-2067, JAL-  -->Tidied up links in help file table of contents</li>
+            <li><!-- JAL-2072  -->Feature based tree calculation not shown for DNA alignments</li>
+            <li><!-- JAL-2075  -->Hidden columns ignored during feature based tree calculation</li>
+            <li><!-- JAL-2065  -->Alignment view stops updating when show unconserved enabled for group on alignment</li>
+            
+            
           </ul>
           <em>Application</em>
           <ul>
             <li><!-- JAL-1944 not yet fixed Error thrown when exporting a view with hidden sequences as flat-file alignment--></li>
             <li><!-- JAL-1911-->Corrupt preferences for SVG, EPS & HTML output when running on non-gb/us i18n platforms</li>
             <li><!-- JAL-1552-->URLs and links can imported by drag'n'drop on OSX webstart</li>
-            <li><!-- JAL-2030, JAL-1941-->InstallAnywhere distribution fails when launching Chimera or adding RNA 3D structure via DSSR service</li>
+            <li><!-- JAL-2030-->InstallAnywhere distribution fails when launching Chimera</li>
+            <li><!-- JAL-2080-->Jalview very slow to launch via webstart (also hotfix for 2.9.0b2)</li>
+            <!--  may exclude, this is an external service stability issue  JAL-1941 /> RNA 3D structure not added via DSSR service</li> -->
           </ul>
           <em>Applet</em>
           <ul>