new features/resolved for 2.4.1.
[jalview.git] / help / html / releases.html
index a7f6cfd..3786fc3 100755 (executable)
                </td>
        </tr>
        <tr>
+       
+               <td>
+               <div align="center"><strong>2.4.1</strong><br>
+               <em>Not Yet Released</em></div>
+               </td>
+               <td>
+               <ul>
+               <li>Enable or disable non-positional feature and database references in sequence ID tooltip from View menu in application.
+               </li>
+               <li>URL links generated from description line for regular-expression based URL links (applet and application)
+               </li>
+               <li>Non-positional features displayed in sequence ID tooltip on applet
+               </li>
+               <li>Non-positional feature URL links are shown in link menu (applet and application)
+               </li>
+               <li>Automatic Scrolling option in View menu to display the currently highlighted region of an alignment.
+               </li>
+               <li>Improved VAMSAS synchronization (jalview archive used to preserve views, structures, and tree display settings)
+               </li>
+               <li>Sharing of selected regions between views and with other VAMSAS applications (Experimental feature!)
+               </li>
+               <li>New hidden columns and rows and representatives capabilities in annotations file (in progress - not yet fully implemented)</li>
+               </ul>
+               </td>
+               <td>
+               <ul>
+               <li>URL links generated for all feature links (bugfix)</li>
+               <li>Dasobert generated non-positional feature URL link text excludes the start_end suffix (application)</li>
+               <li>Added URL embedding instructions to features file documentation.</li>
+               <li>Sequences are now validated against EMBL database (broken in Version 2.4.0)</li>
+               <li>Codons containing ambiguous nucleotides translated as 'X' in peptide product</li>
+               <li>Sequence description lines properly shared via VAMSAS</li>
+               </ul>
+               </td>
+       
+       </tr>
+       <tr>
                <td>
                <div align="center"><strong>2.4</strong><br>
                27/8//2008</div>
                        <li>Visual delay indication for sequence retrieval and sequence fetcher initialisation</li>
                        <li>updated Application to use DAS 1.53e version of dasobert DAS client</li>
                        <li>Re-instated Full AMSA support and .amsa file association</li>
-                       
+                       <li>Fixed parsing of JNet Concise annotation <em>sans</em> sequences</li>  
                </ul>
                </td>
        </tr>