JAL-2576 release notes

[jalview.git] / help / html / releases.html

diff --git a/help/html/releases.html b/help/html/releases.html
index 55bd84e..53b0491 100755 (executable)
--- a/help/html/releases.html
+++ b/help/html/releases.html
@@ -91,6 +91,7 @@ li:before {
               extension when importing structure files without embedded
               names or PDB accessions
             </li>
+            <li><!-- JAL-2547 -->Amend sequence features dialog box can be opened by double clicking gaps within sequence feature extent</li>
           </ul>
           <em>Application</em>
           <ul>
@@ -127,7 +128,7 @@ li:before {
             <li>
               <!-- JAL-2398, -->Fixed incorrect value in BLOSUM 62 score
               matrix - C->R should be '3'<br />Old matrix restored with
-              this one-line groovy script:<br />jalview.schemes.ResidueProperties.BLOSUM62[4][1]=3
+              this one-line groovy script:<br />jalview.analysis.scoremodels.ScoreModels.instance.BLOSUM62.@matrix[4][1]=3
             </li>
             <li>
               <!-- JAL-2397 -->Fixed Jalview's treatment of gaps in PCA
@@ -160,7 +161,8 @@ li:before {
           <li><!-- JAL-2385 -->Colour threshold slider doesn't update to reflect currently selected view or group's shading thresholds</li>
           <li><!-- JAL-2373 -->Percentage identity and conservation menu items do not show a tick or allow shading to be disabled</li>
           <li><!-- JAL-2385 -->Conservation shading or PID threshold lost when base colourscheme changed if slider not visible</li>
-          <li><!-- JAL-2547 -->Sequence features shown in tooltip for gaps before start of features</li> 
+          <li><!-- JAL-2547 -->Sequence features shown in tooltip for gaps before start of features</li>
+          <li><!-- JAL-2576 -->Very large alignments take a long time to load</li>
           </ul>
           <em>Application</em>
           <ul>
@@ -181,6 +183,9 @@ li:before {
               Jalview Projects rather than fetched via URL again when
               the project is loaded and the structure viewed
             </li>
+            <li><!-- JAL-1256 -->Trackpad horizontal scroll gesture adjusts start position in wrap mode</li>
+            <li><!-- JAL-2563 -->Status bar doesn't show positions for ambiguous amino acids</li>
+            <li><!-- JAL-2291 -->Hide insertions in PopUp menu excludes gaps in selection, current sequence and only within selected columns</li> 
           </ul>
           <em>Applet</em>
           <ul>
@@ -191,7 +196,6 @@ li:before {
           <em>New Known Issues</em>
           <ul>
           <li><!--  JAL-2566 -->Protein/CDS view scrolling not always in phase after a sequence motif find operation</li>
-          <li><!-- JAL-2563 -->Status bar doesn't show positions for ambiguous amino acids</li>
           <li><!-- JAL-2550 -->Importing annotation file with rows containing just upper and lower case letters are interpreted as WUSS rna secondary structure symbols</li>  
           </ul>