JAL-1500 JAL-1265 patch to parse PDB database refs in PFAM stockholm
[jalview.git] / help / html / releases.html
index 1eb7abf..6b92a2c 100755 (executable)
@@ -1,22 +1,24 @@
 <html>
 <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
  * Copyright (C) 2014 The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
  * Jalview is free software: you can redistribute it and/or
  * modify it under the terms of the GNU General Public License 
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
  *  
  * Jalview is distributed in the hope that it will be useful, but 
  * WITHOUT ANY WARRANTY; without even the implied warranty 
  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
  * PURPOSE.  See the GNU General Public License for more details.
  * 
- * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
  * The Jalview Authors are detailed in the 'AUTHORS' file.
--->
+ -->
 <head>
 <title>Release History</title>
 </head>
        </tr>
                <tr>
                        <td><div align="center">
-                                       <strong><a name="Jalview.2.8.1">2.8.1</a><br /> <em>3/6/2014</em></strong>
+                                       <strong><a name="Jalview.2.8.1">2.8.1</a><br /> <em>4/6/2014</em></strong>
                                </div></td>
                        <td>
                                <!--  New features --> <!--  For major releases, split into sections: Application | Applet | General | Deployment and Documentation -->
+                               <em>General</em>
                                <ul>
                                        <li>Internationalisation of user interface (usually called
                                                i18n support) and translation for Spanish locale</li>
                                                Ctrl-G/Shift Ctrl-G</li>
                                        <li>Improved group creation/removal options in
                                                alignment/sequence Popup menu</li>
-
+                                       <li>Sensible precision for symbol distribution percentages
+                                               shown in logo tooltip.</li>
+                                       <li>Annotation panel height set according to amount of
+                                               annotation when alignment first opened</li>
                                </ul> <em>Application</em>
                                <ul>
                                        <li>Interactive consensus RNA secondary structure prediction
@@ -58,6 +64,7 @@
                                                sequences</li>
                                        <li>Update Jalview project format:
                                                <ul>
+              <li>New file extension for Jalview projects '.jvp'</li>
                                                        <li>Preserve sequence and annotation dataset (to store
                                                                secondary structure annotation,etc)</li>
                                                        <li>Per group and alignment annotation and RNA helix
                                                (PAM250)</li>
                                        <li>Experimental support for retrieval and viewing of flanking
                                                regions for an alignment</li>
-                               </ul> <em>Applet</em>
-                               <ul>
-
-                               </ul> <em>Other improvements</em>
-                               <li>Sensible precision for symbol distribution percentages
-                                       shown in logo tooltip.</li>
-                               <li>Annotation panel height set according to amount of
-                                       annotation when alignment first opened</li>
                                </ul>
                        </td>
                        <td>